PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020107-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 113aa    MW: 13034.2 Da    PI: 8.3063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020107-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.7e-1133853794
                   EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                   t+   +++sW++++  +++ +r+ ++  W++Fv +n+Lk gD +vF+l+++s   l++
  NNU_020107-RA 33 TF---RNKSWKMYYYGDRGCKRFNMA--WRHFVIDNKLKIGDGCVFELMESSPNILRF 85
                   44...459******558888887666..*******************99765544444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.10E-91491No hitNo description
Gene3DG3DSA:2.40.330.103.0E-112891IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-113191IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-93285IPR003340B3 DNA binding domain
PROSITE profilePS508639.3053593IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MRNYGCCAIY PVQVLPSKLQ QYLPSAMVPV ELTFRNKSWK MYYYGDRGCK RFNMAWRHFV  60
IDNKLKIGDG CVFELMESSP NILRFKVQVL NGDLPSDFIS NIGESESSPI IID
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276851.18e-70PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X1
RefseqXP_010276852.18e-70PREDICTED: B3 domain-containing protein Os04g0386900-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-07B3 family protein